| FinePop2-package {FinePop2} | R Documentation |
Fine-Scale Population Analysis (Rewrite for Gene-Trait-Environment Interaction Analysis)
Description
Statistical tool set for population genetics. The package provides following functions: 1) estimators of genetic differentiation (FST), 2) regression analysis of environmental effects on genetic differentiation using generalized least squares (GLS) method, 3) interfaces to read and manipulate 'GENEPOP' format data files). For more information, see Kitada, Nakamichi and Kishino (2020) <doi:10.1101/2020.01.30.927186>.
Author(s)
Reiichiro Nakamichi, Shuichi Kitada, Hirohisa Kishino
Maintainer: Reiichiro Nakamichi <nakamichi@affrc.go.jp>
References
Kitada S, Nakamichi R, Kishino H (2017) The empirical Bayes estimators of fine-scale population structure in high gene flow species. Mol. Ecol. Resources, 17, 1210-1222.
Nei M, Chesser RK (1983) Estimation of fixation indices and gene diversity. Annals of Human Genetics, 47, 253-259.
Rousset F (2008) Genepop'007: a complete reimplementation of the Genepop software for Windows and Linux. Mol. Ecol. Resources, 8, 103-106.
Weir BS, Cockerham CC (1984) Estimating F-statistics for the analysis of population structure. Evolution, 38, 1358-1370.
Weir BS, Goudet J (2017) A Unified Characterization of Population Structure and Relatedness. Genetics, 206, 2085-2103.