intestine {FateID}

Single-cell transcriptome data of intestinal epithelial cells

Description

This dataset contains gene expression values, i. e. transcript counts, of 278 intestinal epithelial cells, and additional information on different cell types in this sample.

Usage

intestine

Format

A list of the following 5 components:

x

data frame with genes as rows and cells as columns. This reduced data frame only contains expression of the most variable genes.

y

vector containing a clustering partition of the 278 cells into different cell types

v

data frame with genes as rows and cells as columns. This data frame contains expression of all genes.

fcol

vector containing colour values for all clusters in y

Value

None

References

Grün et al. (2016) Cell Stem Cell 19(2): 266-77 (PubMed)