summary.FDX {FDX} | R Documentation |
Summarizing Discrete FDX Results
Description
summary
method for class "FDX
"
Usage
## S3 method for class 'FDX'
summary(object, ...)
## S3 method for class 'summary.FDX'
print(x, max = NULL, ...)
Arguments
object |
an object of class " |
... |
further arguments passed to or from other methods. |
x |
an object of class " |
max |
numeric or |
Details
summary.FDX
objects include all data of an FDX
object, but also include an additional table which includes the raw p-values,
their indices, the respective critical values (if present), the adjusted
p-values (if present) and a logical column to indicate rejection. The table
is sorted in ascending order by the raw p-values.
print.summary.FDX
simply prints the same output as
print.FDX
, but also prints the p-value table.
Value
summary.FDX
computes and returns a list that includes all the
data of an input FDX
, plus
Table |
a |
print.summary.FDX
returns that object invisibly.
Examples
X1 <- c(4, 2, 2, 14, 6, 9, 4, 0, 1)
X2 <- c(0, 0, 1, 3, 2, 1, 2, 2, 2)
N1 <- rep(148, 9)
N2 <- rep(132, 9)
Y1 <- N1 - X1
Y2 <- N2 - X2
df <- data.frame(X1, Y1, X2, Y2)
df
# Construction of the p-values and their supports (fisher.pvalues.support
# is from 'DiscreteFDR' package!)
df.formatted <- fisher.pvalues.support(counts = df, input = "noassoc")
raw.pvalues <- df.formatted$raw
pCDFlist <- df.formatted$support
DGR.crit <- DGR(raw.pvalues, pCDFlist, critical.values = TRUE)
DGR.crit.summary <- summary(DGR.crit)
print(DGR.crit.summary)