| summarizeResults {FAMetA} | R Documentation |
Obtain result tables and heatmaps that help interpreting your results.
Description
Obtain result tables and heatmaps that help interpreting your results.
Usage
summarizeResults(fadata, controlgroup = NA, parameters = FAMetA::parameters)
Arguments
fadata |
fadata containing synthesis, elongation and desaturation results. |
controlgroup |
name of the control group to compare the results. |
parameters |
parameters to be estimated for each fatty acid. It can be modified to change them or to add new fatty acids. |
Value
fadata list with a results element which contains: results data frame (results for the main parameters for each fatty acid and sample), summary data frame (mean and sd by sample groups for each parameter and fatty acids from the results table), different heatmaps representing pool size and results (values represented are also saved in data frames) and tables summarizing all parameters values for synthesis and elongation (S16, E1, E2, E3, E4 and E5).
Author(s)
M Isabel Alcoriza-Balaguer <maribel_alcoriza@iislafe.es>
Examples
ssdata <- dataCorrection(ssexamplefadata, blankgroup="Blank")
ssdata <- synthesisAnalysis(ssdata, R2Thr = 0.95, maxiter = 1e3,
maxconvergence = 100, startpoints = 5)
ssdata <- elongationAnalysis(ssdata, R2Thr = 0.95, maxiter = 1e4,
maxconvergence=100, startpoints = 5, D2Thr = 0.1)
ssdata <- desaturationAnalysis(ssdata, SEThr = 0.05)
ssdata <- summarizeResults(ssdata)
## Not run:
fadata <- dataCorrection(examplefadata, blankgroup = "Blank")
fadata <- synthesisAnalysis(fadata, R2Thr = 0.95, maxiter = 1e3,
maxconvergence = 100, startpoints = 5)
fadata <- elongationAnalysis(fadata, R2Thr = 0.95, maxiter = 1e4,
maxconvergence=100, startpoints = 5, D2Thr = 0.1)
fadata <- desaturationAnalysis(fadata, SEThr = 0.05)
fadata <- summarizeResults(fadata, controlgroup = "Control13Cglc")
## End(Not run)