dataCorrection {FAMetA} | R Documentation |
Data correction for natural abundance of 13C and data normalization using internal standards followed by blank substraction.
Description
Data correction for natural abundance of 13C and data normalization using internal standards followed by blank substraction.
Usage
dataCorrection(
fadata,
correct13C = TRUE,
blankgroup = "blank",
externalnormalization = c(),
resolution = 140000,
purity13C = 0.99,
verbose = TRUE
)
Arguments
fadata |
fadata list. |
correct13C |
logical. If TRUE, data is corrected for natural abundance of 13C. Set to FALSE if data has been already been corrected. |
blankgroup |
name used to define blank samples group. |
externalnormalization |
column name at the metadata data frame of any additional measure that must be used to normalize data (i.e. protein). |
resolution |
resolution of the mass spectrometer. |
purity13C |
purity of the tracer employed. |
verbose |
print information messages. |
Value
corrected fadata.
Author(s)
M Isabel Alcoriza-Balaguer <maribel_alcoriza@iislafe.es>
References
Su X, Lu W, Rabinowitz J (2017). Metabolite Spectral Accuracy on Orbitraps. Analytical Chemistry, 89(11), 5940-5948, PMID: 28471646, R package version 0.2.4 (2021), <https://doi.org/10.1021/acs.analchem.7b00396>.
Examples
ssdata <- dataCorrection(ssexamplefadata, blankgroup="Blank")