epGraphs {ExPosition}

epGraphs: ExPosition plotting function

Description

ExPosition plotting function which is an interface to prettyGraphs.

Usage

epGraphs(res, x_axis = 1, y_axis = 2, epPlotInfo = NULL, DESIGN=NULL, 
	fi.col = NULL, fi.pch = NULL, fj.col = NULL, fj.pch = NULL, col.offset = NULL, 
	constraints = NULL, xlab = NULL, ylab = NULL, main = NULL, 
	contributionPlots = TRUE, correlationPlotter = TRUE,
	graphs = TRUE)

Arguments

res

results from ExPosition

x_axis

which component should be on the x axis?

y_axis

which component should be on the y axis?

epPlotInfo

A list ($Plotting.Data) from epGraphs or ExPosition.

DESIGN

A design matrix to apply colors (by pallete selection) to row items

fi.col

A matrix of colors for the row items. If NULL, colors will be selected.

fi.pch

A matrix of pch values for the row items. If NULL, pch values are all 21.

fj.col

A matrix of colors for the column items. If NULL, colors will be selected.

fj.pch

A matrix of pch values for the column items. If NULL, pch values are all 21.

col.offset

A numeric offset value. Is passed to createColorVectorsByDesign.

constraints

Plot constraints as returned from prettyPlot. If NULL, constraints are selected.

xlab

x axis label

ylab

y axis label

main

main label for the graph window

contributionPlots

a boolean. If TRUE (default), contribution bar plots will be created.

correlationPlotter

a boolean. If TRUE (default), a correlation circle plot will be created. Applies to PCA family of methods (CA is excluded for now).

graphs

a boolean. If TRUE, graphs are created. If FALSE, only data associated to plotting (e.g., constraints, colors) are returned.

Details

epGraphs is an interface between ExPosition and prettyGraphs.

Value

The following items are bundled inside of $Plotting.Data:

$fi.col

the colors that are associated to the row items ($fi).

$fi.pch

the pch values associated to the row items ($fi).

$fj.col

the colors that are associated to the column items ($fj).

$fj.pch

the pch values associated to the column items ($fj).

$constraints

axis constraints for the plots (determines end points of the plots).

Author(s)

Derek Beaton

See Also

prettyGraphs

Examples

	#this is for ExPosition's iris data
	data(ep.iris)
	pca.iris.res <- epPCA(ep.iris$data)
	#this will put plotting data into a new variable.
	epGraphs.2.and.3 <- epGraphs(pca.iris.res,x_axis=2,y_axis=3)