bar.evaluate.core {EvaluateCore} | R Documentation |
Bar Plots
Description
Plot Bar plots to graphically compare the frequency distributions of qualitative traits between entire collection (EC) and core set (CS).
Usage
bar.evaluate.core(data, names, qualitative, selected)
Arguments
data |
The data as a data frame object. The data frame should possess one row per individual and columns with the individual names and multiple trait/character data. |
names |
Name of column with the individual names as a character string |
qualitative |
Name of columns with the qualitative traits as a character vector. |
selected |
Character vector with the names of individuals selected in
core collection and present in the |
Value
A list with the ggplot
objects of relative frequency bar plots
of CS and EC for each trait specified as qualitative
.
See Also
Examples
data("cassava_CC")
data("cassava_EC")
ec <- cbind(genotypes = rownames(cassava_EC), cassava_EC)
ec$genotypes <- as.character(ec$genotypes)
rownames(ec) <- NULL
core <- rownames(cassava_CC)
quant <- c("NMSR", "TTRN", "TFWSR", "TTRW", "TFWSS", "TTSW", "TTPW", "AVPW",
"ARSR", "SRDM")
qual <- c("CUAL", "LNGS", "PTLC", "DSTA", "LFRT", "LBTEF", "CBTR", "NMLB",
"ANGB", "CUAL9M", "LVC9M", "TNPR9M", "PL9M", "STRP", "STRC",
"PSTR")
ec[, qual] <- lapply(ec[, qual],
function(x) factor(as.factor(x)))
bar.evaluate.core(data = ec, names = "genotypes",
qualitative = qual, selected = core)
[Package EvaluateCore version 0.1.3 Index]