haplotyping {Ease}

Haplotyping

Description

Generation of haplotypes associated with a Genome object.

Usage

haplotyping(genomeObj)

Arguments

genomeObj

a Genome object

Details

The generated haplotypes are output as a list of three enumeration in the form of matrices of alleles (each row corresponding to an haplotype, each column to a locus). The first enumeration corresponds to haplotypes considering only haploid loci, the second only diploid loci and the third all loci (with two matrices, 1 for haploid loci, 1 for diploid loci).

Value

A list of matrices describing haplotypes in rows.

Author(s)

Ehouarn Le Faou