summariseDrugUse {DrugUtilisation}

This function is used to summarise the dose table over multiple cohorts.

Description

Usage

summariseDrugUse(
  cohort,
  cdm = lifecycle::deprecated(),
  strata = list(),
  estimates = c("min", "q05", "q25", "median", "q75", "q95", "max", "mean", "sd",
    "count_missing", "percentage_missing"),
  minCellCount = lifecycle::deprecated()
)

Arguments

cohort

Cohort with drug use variables and strata.

cdm

Deprecated.

strata

Stratification list.

estimates

Estimates that we want for the columns.

minCellCount

Deprecated.

Value

A summary of the drug use stratified by cohort_name and strata_name

Examples

library(DrugUtilisation)
library(PatientProfiles)

cdm <- mockDrugUtilisation()
codelist <- CodelistGenerator::getDrugIngredientCodes(cdm, "acetaminophen")
cdm <- generateDrugUtilisationCohortSet(
  cdm, "dus_cohort", codelist
)
cdm[["dus_cohort"]] <- cdm[["dus_cohort"]] |>
  addDrugUse(ingredientConceptId = 1125315)
result <- summariseDrugUse(cdm[["dus_cohort"]])
print(result)

cdm[["dus_cohort"]] <- cdm[["dus_cohort"]] |>
  addSex() |>
  addAge(ageGroup = list("<40" = c(0, 39), ">=40" = c(40, 150)))

cdm[["dus_cohort"]] |>
  summariseDrugUse(strata = list("age_group", "sex", c("age_group", "sex")))