plotIndication {DrugUtilisation}

Generate a plot visualisation (ggplot2) from the output of summariseIndication

Description

Generate a plot visualisation (ggplot2) from the output of summariseIndication

Usage

plotIndication(
  result,
  x = "window",
  facet = c("cdm_name", "cohort_name", "strata"),
  color = c("indication"),
  splitStrata = TRUE
)

Arguments

result

A summarised_result object.

x

Variables to be used in the x axis.

facet

Variables to be used to facet the plot.

color

Variables to be used to color the plot.

splitStrata

Whether to split strata.

Value

A ggplot2 object

Examples

library(DrugUtilisation)
library(CDMConnector)
library(dplyr)

cdm <- mockDrugUtilisation()

indications <- list("headache" = 378253, "asthma" = 317009)
cdm <- generateConceptCohortSet(cdm, indications, "indication_cohorts")

cdm <- generateIngredientCohortSet(
  cdm = cdm, name = "drug_cohort", ingredient = "acetaminophen"
)

result <- cdm$drug_cohort |>
  summariseIndication(
    indicationCohortName = "indication_cohorts",
    unknownIndicationTable = "condition_occurrence",
    indicationWindow = list(c(-Inf, 0), c(-365, 0))
  )

plotIndication(result)