hist.DiscreteFDR {DiscreteFDR} | R Documentation |
Histogram of Raw P-Values
Description
Computes a histogram of the raw p-values of a DiscreteFDR
object.
Usage
## S3 method for class 'DiscreteFDR'
hist(x, breaks = "FD", plot = TRUE, ...)
Arguments
x |
an object of class |
breaks |
as in |
plot |
a boolean; if |
... |
further arguments to |
Details
This method simply calls hist
and passes the raw p-values of the object.
Value
An object of class histogram
.
Examples
X1 <- c(4, 2, 2, 14, 6, 9, 4, 0, 1)
X2 <- c(0, 0, 1, 3, 2, 1, 2, 2, 2)
N1 <- rep(148, 9)
N2 <- rep(132, 9)
Y1 <- N1 - X1
Y2 <- N2 - X2
df <- data.frame(X1, Y1, X2, Y2)
df
# Compute p-values and their supports of Fisher's exact test
test.result <- generate.pvalues(df, "fisher")
raw.pvalues <- test.result$get_pvalues()
pCDFlist <- test.result$get_pvalue_supports()
DBH <- DBH(raw.pvalues, pCDFlist)
hist(DBH)
[Package DiscreteFDR version 2.0.0 Index]