cluster.molecule {DiffCorr}

Hierarchical clustering of molecules

Description

Cluster molecules

Usage

cluster.molecule(
  data,
  method = "pearson",
  linkage = "average",
  absolute = FALSE
)

Arguments

data

matrix or data frame

method

c("pearson", "spearman", "kendall", "euclidean", "maximum", "manhattan", "canberra", "binary", or "minkowski")

linkage

c("average", "ward", "single", "complete", "mcquitty", "median", "centroid")

absolute

if TRUE, then 1-|COR| else 1-COR, default is FALSE

Value

an object of class 'hclust'

Author(s)

Atsushi Fukushima

Examples

cluster.molecule(as.matrix(t(iris[,1:4])), "pearson", "average")