print.dbOptim {DNAtools} | R Documentation |
Prints the results from optim.relatedness()
Description
Prints the evaluated functions for the object function, best estimate of alpha and possibly list of variances.
Usage
## S3 method for class 'dbOptim'
print(x, var.list = FALSE, ...)
Arguments
x |
Object returned by optim.relatedness() |
var.list |
Logical. Whether the (long) list of variance components should be printed to the screen. |
... |
... |
Details
Prints the summary details of the fit
Value
A dataframe with [theta,value] and a vector of fitted alpha parameters
Author(s)
James Curran and Torben Tvedebrink
See Also
optim.relatedness
Examples
## Not run:
## Simulate some allele frequencies:
freqs <- replicate(10, { g = rgamma(n=10,scale=4,shape=3); g/sum(g)},
simplify=FALSE)
## Load the sample database:
data(dbExample)
obs <- dbCompare(dbExample,trace=FALSE)$m
C3 <- optim.relatedness(obs,theta0=0.0,theta1=0.03,probs=freqs,
objFunction='C3',max.bisect=30,trace=TRUE)
print(C3)
## End(Not run)
[Package DNAtools version 0.2-4 Index]