rename_dupnewID {DDPNA} | R Documentation |
rename_dupnewID
Description
rename the duplicated newID in moduleinf and renew the ID in DEPstat
Usage
rename_dupnewID(DEPstat, moduleinf, DEPfromMod = FALSE)
Arguments
DEPstat |
a dataframe contains columns:"new.ID" and "ori.ID". it can get from |
moduleinf |
a dataframe contains columns:"new.ID" and "ori.ID". it can get from |
DEPfromMod |
a logical value indicated that whether DEPstat and moduleinf is getted from the same datasets. The default value is FALSE. |
Value
a data.frame contains DEPstat information and renewed the new.ID column.
Author(s)
Kefu Liu
Examples
data(net)
data(imputedData)
Module <- Module_inf(net, imputedData$inf)
group <- gsub("[0-9]+","", colnames(imputedData$intensity))
data <- imputedData
data$inf <- data$inf[1:100,]
data$intensity <- data$intensity[1:100,]
stat <- dataStatInf(data, group, meanmethod = "median",
T.test = "pairwise", Aadj = "fdr",
Tadj = "fdr", cutoff = FALSE)
stat <- rename_dupnewID(stat, Module, DEPfromMod = TRUE)
[Package DDPNA version 0.3.3 Index]