moduleID {DDPNA} | R Documentation |
extract intersection ID between dataset and module
Description
extract intersection ID between dataset and one of module
Usage
moduleID(inf, module, num, coln = "new.ID")
Arguments
inf |
dataset protein ID information. a vector of protein IDs. |
module |
module information which is getted in |
num |
module number which will extract to compared with dataset ID information. |
coln |
column names of module protein IDs. |
Details
column coln
information in module
when module number is num
intersect with inf.
Author(s)
Kefu Liu
Examples
data(net)
data(imputedData)
data <- imputedData
logD <- data$log2_value
rownames(logD) <- data$inf$ori.ID
group <- gsub("[0-9]+","", colnames(logD))
Module <- Module_inf(net, data$inf)
up <- changedID(logD, group, vs.set2 = "ad",vs.set1 = "ctl",
rank = "foldchange",anova = FALSE, Padj = "none",cutoff = 1,
datatype = "log2",fctype = "up")
intersection <- moduleID(up, Module, 5, coln = "ori.ID")
[Package DDPNA version 0.3.3 Index]