P.G.extract {DDPNA}

Protein Groups information extract.

Description

uniprot ID, ENTRYNAME and status information extract.(only fit for 'MaxQuant' data.)

Usage

P.G.extract(inf, ncol = 4, justID = FALSE,
            status1 = TRUE, ENTRY1 = TRUE, ID1 = TRUE,
            sp1 = TRUE, onlysp = FALSE, verbose = 0)

Arguments

inf

protein groups IDs information.

ncol

column numbers of output result.

justID

a logical value indicated whether only extract uniprot ID.

status1

a logical value indicated whether extract the first ID status.

ENTRY1

a logical value indicated whether extract the first ID ENTRY NAME.

ID1

a logical value indicated whether extract the first ID UNIPROT ACCESSION.

sp1

a logical value indicated whether extract the first sp ID as the new first ID.

onlysp

a logical value indicated whether only keep sp ID in the second or later ID result.

verbose

integer level of verbosity. Zero means silent, 1 means have Diagnostic Messages.

Author(s)

Kefu Liu

Examples

data(ProteomicData)
MaxQdata <- MaxQprotein(ProteomicData$MaxQ)
inf <- P.G.extract(MaxQdata$protein_IDs, justID = TRUE, status = TRUE, ENTRY = TRUE)