ME_inf {DDPNA}R Documentation

module eigengenes information

Description

put sample names as rownames in WGCNA module eigenvalue data.frame.

Usage

ME_inf(MEs, data, intensity.type = "LFQ", rowname = NULL)

Arguments

MEs

module eigenvalue which is calculated in WGCNA package.

data

protein quantification data. column is sample. row is protein ID.

intensity.type

quantification data type, which can help extract sample name. This must be (an abbreviation of) one of the strings "LFQ","intensity","iBAQ","none".

rowname

sample names when "intensity.type" is "none", rowname will be used.

Author(s)

Kefu Liu

Examples

data(net)
data(imputedData)
data <- imputedData
logD <- data$log2_value
MEs <- ME_inf(net$MEs, logD)

[Package DDPNA version 0.3.1 Index]