Model.Faddy {CountsEPPM}

Function for Faddy distribution with log link.

Description

Returns probabilities for a Faddy distribution given inputs of model and parameters.

Usage

Model.Faddy(parameter, model.name, link, covariates.matrix.mean,
 offset.mean, fixed.b, vnmax)

Arguments

parameter

A vector of the parameters of the model which is set to initial estimates on function call.

model.name

The model being fitted is one of the five 'Poisson', 'negative binomial', 'negative binomial fixed b', 'Faddy distribution', 'Faddy distribution fixed b'.

link

Takes one of one values i.e., 'log'. The default is 'log'.

covariates.matrix.mean

A matrix of covariates for the mean where rows are the number of values in listcounts and columns the covariates. This matrix is extracted from the formulae in function CountsEPPM. However, in the accompanying example it is shown how it can be constructed independently of function CountsEPPM.

offset.mean

An offset vector for the mean. The default is a vector of ones. This matrix is extracted from the formulae in function CountsEPPM.

fixed.b

Set to the value of the parameter b if a fixed.b model is being used.

vnmax

A vector of the maximum counts for each vector in list.counts i.e. the list of grouped counts.

Value

The list output with elements

model

The model being fitted

estimate

Estimates of parameters

probabilities

Vector of probabilities

Author(s)

David M. Smith <[e-mail]>

References

Faddy M, Smith D. (2011). Analysis of count data with covariate dependence in both mean and variance. Journal of Applied Statistics, 38, 2683-2694. doi:10.1002/bimj.201100214.

Examples

all.counts=c(rep(0,5), 352, 479, 530, 291, 101, 17)
nmax1  <- length(all.counts)
nmax   <- nmax1 - 1
cnum   <- 0:nmax
ncount <- sum(all.counts)  
all.mean <- t(cnum) 
alldata <- data.frame(all.mean)
mf <- model.frame(formula = all.mean ~ 1, data = alldata)
covariates.matrix.mean <- model.matrix(attr(mf, "terms"), data = mf)
list.counts <- list(all.counts)
parameter <- c(53.047752, -13.205655, 3.801599)
names(parameter) <- c('log(a)', 'c', 'log(b)') 
model.name <- 'Faddy distribution'
link <- "log"
attr(link, which="mean") <- make.link(link)
offset.mean <- matrix(c(rep(0, nrow(covariates.matrix.mean))), ncol=1)
output <- Model.Faddy(parameter, model.name, link,
 covariates.matrix.mean, offset.mean, fixed.b = NA,
 vnmax = c(10))
print(output)