upset_test {ComplexUpset}

Test for differences between intersections

Description

This is a wrapper around compare_between_intersections(), adding sorting by FDR, warnings, etc.

Usage

upset_test(data, intersect, ...)

Arguments

data

a dataframe including binary columns representing membership in classes

intersect

which columns should be used to compose the intersection

...

Arguments passed on to compare_between_intersections

test

the default test function; it is expected to accept formula and data parameters, and a list with p.value, statistic, and method

tests

a named list with tests for specific variables, overwriting the default test

ignore

a list with names of variables to exclude from testing

ignore_mode_columns

whether the membership columns and size columns for all modes should be ignored

mode

region selection mode; note that modes other than exclusive_intersection repeat observations in different test group, introducing dependencies. See get_size_mode() for accepted values.