SARS_CoV_2 {ClusTorus}

SARS-CoV-2: chain B of Structure of the SARS-CoV-2 spike glycoprotein(closed state)

Description

The torsion angle dataset of the chain B of SARS-CoV-2 spike glycopreotein. This data is originally from first two main torsion angles of data_6VXX.

Usage

SARS_CoV_2

Format

This data.frame contains the following columns:

phi

main chain torsion angle for atoms C,N,CA,C.

psi

main chain torsion angle for atoms N,CA,C,N.

Details

This data is obtained with following codes:

Source

This data can be downloaded in https://www.rcsb.org/structure/6VXX, or with using R package bio3d. To see the precise extracting code, visit https://github.com/sungkyujung/ClusTorus/tree/master/data-raw

References

Walls, A. C., Park, Y. J., Tortorici, M. A., Wall, A., McGuire, A. T., & Veesler, D. (2020). Structure, function, and antigenicity of the SARS-CoV-2 spike glycoprotein. Cell, 181(2), 281-292. Retrived from https://www.wwpdb.org/pdb?id=pdb_00006vxx

See Also

Description of the angluar information is from the 'value' part of torsion.pdb in the package bio3d.