read.RevBayes {CRABS}

read RevBayes log file

Description

read RevBayes log file

Usage

read.RevBayes(x, n_times, max_t = 100, n_samples = 20, summary_type = "none", 
extinction_prefix = "extinction_rate.", speciation_prefix = "speciation_rate.")

Arguments

x

path to log, or data frame

n_times

number of time knots

max_t

tree height

n_samples

first n posterior samples

summary_type

either "none" for all the posterior samples, or "mean" or "median" for the posterior mean/median

extinction_prefix

the prefix string for the extinction rate column names. Must be unique

speciation_prefix

the prefix string for the speciation rate column names. Must be unique

Value

a set of CRABS models, each being a sample in the posterior

Examples

data(primates_ebd_log)
posterior <- read.RevBayes(primates_ebd_log, n_times = 500, max_t = 65, n_samples = 20)