summary_tsne_centralities {CINNA}R Documentation

Summarize t-Distributed Stochastic Neighbor Embedding (t-SNE) on centrality measures

Description

This function summarize tsne analysis results on centrality measures

Usage

summary_tsne_centralities(x, dims = 2, perplexity = 5, scale = TRUE)

Arguments

x

a list containg the computed cetrality values

dims

integer; number of the outpu dimensions(default=2)

perplexity

numeric; A flexible measure of the efficient number of neighbors. The performance of SNE is fairly robust to changes in the perplexity, and typical values are between 5 and 50.(default=5)

scale

Whether the centrality values should be scaled or not(default=TRUE)

Value

It resturns a list containing below values:

Y Matrix containing the new representations for the objects

costs The cost for every object after the final iteration

Author(s)

Minoo Ashtiani, Mehdi Mirzaie, Mohieddin Jafari

See Also

Rtsne


[Package CINNA version 1.1.55 Index]