eunomiaDir {CDMConnector}

Create a copy of an example OMOP CDM dataset

Description

Creates a copy of a Eunomia database, and returns the path to the new database file. If the dataset does not yet exist on the user's computer it will attempt to download the source data to the the path defined by the EUNOMIA_DATA_FOLDER environment variable.

Usage

eunomiaDir(
  datasetName = "GiBleed",
  cdmVersion = "5.3",
  databaseFile = tempfile(fileext = ".duckdb")
)

eunomia_dir(
  dataset_name = "GiBleed",
  cdm_version = "5.3",
  database_file = tempfile(fileext = ".duckdb")
)

Arguments

datasetName, dataset_name

One of "GiBleed" (default), "synthea-allergies-10k", "synthea-anemia-10k", "synthea-breast_cancer-10k", "synthea-contraceptives-10k", "synthea-covid19-10k", "synthea-covid19-200k", "synthea-dermatitis-10k", "synthea-heart-10k", "synthea-hiv-10k", "synthea-lung_cancer-10k", "synthea-medications-10k", "synthea-metabolic_syndrome-10k", "synthea-opioid_addiction-10k", "synthea-rheumatoid_arthritis-10k", "synthea-snf-10k", "synthea-surgery-10k", "synthea-total_joint_replacement-10k", "synthea-veteran_prostate_cancer-10k", "synthea-veterans-10k", "synthea-weight_loss-10k"

cdmVersion, cdm_version

The OMOP CDM version. Must be "5.3" or "5.4".

databaseFile, database_file

The full path to the new copy of the example CDM dataset.

Value

The file path to the new Eunomia dataset copy

Examples

## Not run: 
 con <- DBI::dbConnect(duckdb::duckdb(), eunomiaDir("GiBleed"))
 DBI::dbDisconnect(con, shutdown = TRUE)

## End(Not run)