Identify_ConservedNetworks {CACIMAR}

Identify conserved regulatory networks

Description

Use Score of Conserved network to identify conserved regulatory network modules based on homologous genes databased and topology of networks

Usage

Identify_ConservedNetworks(
  OrthG,
  Species1_GRN,
  Species2_GRN,
  Species_name1,
  Species_name2
)

Arguments

OrthG

ortholog genes database

Species1_GRN

gene regulatory network of species 1

Species2_GRN

gene regulatory network of species 2

Species_name1

character, indicating the species names of Species1_GRN

Species_name2

character, indicating the species names of Species2_GRN

Value

list contains two df. First df contains details of conserved regulatory network, second df contains NCS between module pairs

Examples

load(system.file("extdata", "gene_network.rda", package = "CACIMAR"))
n1 <- Identify_ConservedNetworks(OrthG_Mm_Zf,mm_gene_network,zf_gene_network,'mm','zf')