Identify_ConservedCellTypes {CACIMAR}

Identify conserved cell types based on power of genes and orthologs database

Description

Identify conserved cell types based on power of genes and orthologs database

Usage

Identify_ConservedCellTypes(
  OrthG,
  Species1_Marker_table,
  Species2_Marker_table,
  Species_name1,
  Species_name2
)

Arguments

OrthG

ortholog genes database

Species1_Marker_table

data.frame of species 1, should contain three column: 'gene', 'cluster' and 'power'

Species2_Marker_table

data.frame of species 2, should contain three column: 'gene', 'cluster' and 'power'

Species_name1

character, indicating the species names of Species1_Marker_table

Species_name2

character, indicating the species names of Species2_Marker_table

Value

list contains two elements: first one is details of conserved cell types, second one is matrix of cell types conserved score

Examples

load(system.file("extdata", "CellTypeAllMarkers.rda", package = "CACIMAR"))
expression <- Identify_ConservedCellTypes(OrthG_Mm_Zf,mm_Marker[1:30,],zf_Marker[1:30,],'mm','zf')