Heatmap_Cor {CACIMAR}

plot the heatmap of marker genes across different species

Description

plot the heatmap of marker genes across different species

Usage

Heatmap_Cor(
  RNA1,
  RowType1 = "",
  ColType1 = "",
  cluster_cols = TRUE,
  cluster_rows = FALSE,
  Color1 = NULL,
  ...
)

Arguments

RNA1

correlation of expression in each cell type

RowType1

character, indicating the cell types that you want to show on the row in heatmap. RowType1=” means show all cell types

ColType1

character, indicating the cell types that you want to show on the column in heatmap. RowType1=” means show all cell types

cluster_cols

boolean values determining if columns should be clustered or hclust object

cluster_rows

boolean values determining if rows should be clustered or

hclust object

Color1

vector of colors used in heatmap

...

parameter in pheatmap

Value

pheatmap object

Examples

load(system.file("extdata", "network_example.rda", package = "CACIMAR"))
n1 <- Identify_ConservedNetworks(OrthG_Mm_Zf,mmNetwork,zfNetwork,'mm','zf')
Heatmap_Cor(n1[[2]],cluster_cols=TRUE, cluster_rows=FALSE)