read_jplace {BoSSA}

Read a jplace file

Description

Read a jplace file

Usage

read_jplace(jplace_file, full = TRUE)

Arguments

jplace_file

A jplace file name

full

If set to FALSE, only the tree is read from the jplace file

Details

When the jplace or sqlite files are imported into R, the node numbering available in the original file is converted to the class "phylo" numbering. The class phylo is defined in the "ape" package.

Value

A list with

arbre

The tree in class "phylo" over wich placements are performed

placement

The placement table

multiclass

The multiclass table

run

The command line used to obtained the jplace file

Author(s)

pierre lefeuvre

See Also

read_sqlite