expressionPlot {BiSEp}

expressionPlot: Create visualisations from BIGEE output

Description

Takes the output from the function BISEP and two gene names that correspond to a relevant gene pair. Gene names must be available in the input BISEP object.

Usage

expressionPlot(
	bisepData=data,
	gene1,
	gene2
	)

Arguments

bisepData

This should be the output from the BISEP function.

gene1

The first gene whose expression you would like to plot.

gene2

The second gene whose expression you would like to plot.

Details

The function will return an error if any of the input information is incorrect or missing. The resulting plot will be returned in real time.

Value

A scatter plot of the two genes you have identified as bimodal. The red lines correspond to the mid-points of the bimodal distribution for these two genes. Ideally the lower left quadrant would be empty when observing a candidate SL interaction.

Author(s)

Mark Wappett

Examples

data(BISEP_data)
data(MUT_data)
expressionOut <- expressionPlot(BISEP_data, gene1="SMARCA1", gene2="SMARCA4")