kirp {BiDAG}R Documentation

kirp dataset

Description

Mutation data from TCGA kidney renal papillary cell cohort (KIRP). Mutations are picked according to q-value computed by MutSigCV (q<0.1) or connected in networks discovered by Kuipers et al. 2018.

Usage

kirp

Format

An object of class matrix (inherits from array) with 282 rows and 70 columns.

Details

Each variable represents a gene. If in sample i gene j contains a mutation, than j-th element in row i equals 1, and 0 otherwise. The rows are named according to sample names in TCGA. The columns are named according to gene symbols.

References

https://portal.gdc.cancer.gov/

http://firebrowse.org/iCoMut/?cohort=kirp

Lawrence, M. et al. Mutational heterogeneity in cancer and the search for new cancer-associated genes. Nature 499, 214-218 (2013)


[Package BiDAG version 2.0.4 Index]