getTrace {BiDAG} | R Documentation |
Extracting trace from MCMC object
Description
This function extracts a trace of
DAG scores
DAG adjacency matrices
orders
order scores
from the result of the MCMC run. Note that the last three options work only when the parameter 'scoreout' was set to TRUE.
Usage
getTrace(x, which = 0)
Arguments
x |
object of class 'orderMCMC','partitionMCMC' or 'iterativeMCMC' |
which |
integer, indication which trace is returned: DAG scores (which = 0), DAGs (which = 1), orders (which = 2), order scores (which = 3) |
Value
a list or a vector of objects representing MCMC trace, depends on parameter 'which'; by default, the trace of DAG scores is returned
Examples
myscore<-scoreparameters("bge",Boston)
## Not run:
orderfit<-sampleBN(myscore,algorithm="order")
DAGscores<-getTrace(orderfit,which=0)
DAGtrace<-getTrace(orderfit,which=1)
orderscores<-getTrace(orderfit,which=3)
## End(Not run)
[Package BiDAG version 2.1.4 Index]