getDAG {BiDAG}R Documentation

Extracting adjacency matrix (DAG) from MCMC object

Description

This function extracts an adjacency matrix of a maximum scoring DAG from the result of the MCMC run.

Usage

getDAG(x, amat = TRUE, cp = FALSE)

Arguments

x

object of class 'orderMCMC','partitionMCMC' or 'iterativeMCMC'

amat

logical, when TRUE adjacency matrix is returned and object of class 'graphNEL' otherwise

cp

logical, when TRUE the CPDAG (equivalence class) is returned and DAG otherwise; FALSE by default

Value

adjacency matrix of a maximum scoring DAG (or CPDAG) discovered/sampled in one MCMC run

Examples

myscore<-scoreparameters("bge", Boston)
## Not run: 
itfit<-iterativeMCMC(myscore)
maxEC<-getDAG(itfit,cp=TRUE)

## End(Not run)

[Package BiDAG version 2.0.4 Index]