summarize.ref {BarcodingR}

Summarize Reference Data

Description

Summarize taxon information, sequence statistics,barcodes numbers per species for reference dataset.

Usage

summarize.ref(ref, taxonStat = TRUE, seqStat = TRUE, barcodeStat = TRUE)

Arguments

ref

object of class "DNAbin" used as a reference dataset, which contains taxon information, or just an array containing taxon information only.

taxonStat

logic value to indicate whether the item is calculated only when ref is an object of class "DNAbin".

seqStat

logic value to indicate whether the item is calculated

barcodeStat

logic value to indicate whether the item is calculated

Value

a list containing taxon statistics, sequence statistics, population parameters,barcoding statistics ()

Author(s)

Ai-bing ZHANG, Meng-di HAO, CNU, Beijing, CHINA.

References

zhangab2008(at)mail.cnu.edu.cn./zhangab2008(at)gmail.com.

Examples

data(TibetanMoth)
s.r<-summarize.ref(TibetanMoth,taxonStat=TRUE,seqStat=TRUE,barcodeStat=TRUE)
s.r