| scale_counts {BRACoD.R} | R Documentation |
Normalize OTU counts and add a pseudo count
Description
BRACoD requires relative abundance and cannot handle zeros, so this function adds a small pseudo count (1/10th the smallest non-zero value).
Usage
scale_counts(df_counts)
Arguments
df_counts |
A dataframe of OTU counts. Samples are rows and bacteria are columns. |
Value
a dataframe of relative abundance data
[Package BRACoD.R version 0.0.2.0 Index]