cons_clust {AutoPipe} | R Documentation |
A function to plot do a Consensus clustering to validate the results
Description
this function calls the ConsensusClusterPlus function with thedaraset and plots a plot with the heatmaps of the clustering for each number of clusters from 2 to max_clust
Usage
cons_clust(data,max_clust,TOPgenes)
Arguments
data |
this is the data for the ConsensusClusterPlus |
max_clust |
the max number of clusters that should be evaluated. |
TOPgenes |
the number of the top genes to choose for the clustering |
Value
plots a plot with all the heatmaps from the ConsensusClusterPlus for the number ofd clusters 2 to max_clust the same return value as the COnsensusClusterPlus
Examples
data(rna)
cons_clust(rna,5,TOPgenes=50)
[Package AutoPipe version 0.1.6 Index]