AutoPipe_tSNE {AutoPipe}

Implemented t-distributed stochastic neighbor embedding

Description

This function is used to upload a table into R for further use in the AutoPipe

Usage

AutoPipe_tSNE(me,perplexity=30,max_iter=500,groups_men)

Arguments

me

The path of the expression table

perplexity

numeric; Perplexity parameter

max_iter

integer; Number of iterations (default: 1000)

groups_men

the data frame with the group clustering that the function Groups_Sup or top_supervised (2. place on the list) returns with the data about each sample and its coressponding cluster.