geoChina {AnnoProbe}R Documentation

Download expression dataset by GSE id

Description

geoChina will download the expression matrix and phenotype data as ExpressionSet format from cloud in mainland China, it's a alternative method for getGEO function from GEOquery package. geoChina('gse1009') is the same as eSet=getGEO('gse1009', getGPL = F)

Usage

geoChina(gse = "GSE2546", mirror = "tencent", destdir = getwd())

Arguments

gse

input GSE id, such as GSE1009, GSE2546, gse1009.

mirror

"tencent" only for now.

destdir

The destination directory for data downloads.

Value

a list of ExpressionSet, which contains the expression matrix and phenotype data

Examples

## Not run: 
geoChina('GSE1009',destdir=tempdir())

## End(Not run)

[Package AnnoProbe version 0.1.6 Index]