filterEM {AnnoProbe} | R Documentation |
Filter expression matrix based on annotation
Description
filterEM
will annotate the probes in expression matrix and remove the duplicated gene symbols.
because there will be many probes mapped to same genes, we will only keep the max value one.
Usage
filterEM(probes_expr, probe2gene)
Arguments
probes_expr |
is an expression matrix which rownames are probes of probe2gene and each column is a sample |
probe2gene |
the first column is probes and the second column is corresponding gene symbols |
Value
a expression matrix which has been filtered duplicated gene symbols
Examples
attach(GSE95166)
# head(probes_expr)
# head(probe2gene)
genes_expr <- filterEM(probes_expr,probe2gene)
# head(genes_expr)
[Package AnnoProbe version 0.1.7 Index]