check_diff_genes {AnnoProbe} | R Documentation |
Check a list of genes how they show difference.
Description
How does a gene or a list of genes show difference between two group. The boxplot or heatmap will be drawed. just a wrap function of ggpubr and pheatmap.
Usage
check_diff_genes(gene, genes_expr, group_list)
Arguments
gene |
A vector contains all gene ids of interest. Gene ids should be gene symbol. |
genes_expr |
An expression matrix, the rownames should be gene symbol. |
group_list |
A vector contains the group information of each samples in expression matrix |
Value
A figure : boxplot or heatmap
Examples
attach(GSE95166)
check_diff_genes('LRCH3',genes_expr,group_list )
x=DEG$logFC
names(x)=rownames(DEG)
cg=c(names(head(sort(x),100)), names(tail(sort(x),100)))
check_diff_genes(cg,genes_expr,group_list )
[Package AnnoProbe version 0.1.7 Index]