| truenet {Ac3net} | R Documentation |
The known intreactions of E.coli from RegulonDB database.
Description
This true interactions of E.coli from RegulonDB database.
Usage
data("truenet")Details
These true interactions are mainly from RegulonDB database. We compiled the one from (Faith, 2007), and the RegulonDB database (TF-TF and TF-gene).We removed the links where the gene names is not evailable in our example E.coli dataset. See the references for the usage information of the data.
Source
This data was downloaded from http://regulondb.ccg.unam.mx/menu/download/datasets/index.jsp and m3d.mssm.edu/network_inference.html .
References
Gama-Castro S, et.al., RegulonDB version 9.0: high-level integration of gene regulation, coexpression, motif clustering and beyond., Nucleic Acids Res. 2016 Jan 4;44(D1):D133-43.
Faith JJ, Hayete B, Thaden JT, Mogno I, Wierzbowski J, Cottarel G, Kasif S, Collins JJ, Gardner TS. Large-scale mapping and validation of Escherichia coli transcriptional regulation from a compendium of expression profiles. PLoS Biol. 2007 Jan;5(1):e8
Examples
data(truenet)