mergeCloneSizes {APackOfTheClones}

Merge a list of Clustered Clonotype Frequency Tables

Description

The list of clustered clonotype frequencies from countCloneSizes can be merged by this function to a frequency table of all clonotypes similar to the data that can be seen in the seurat object metadata. By default, this function sorts the table with largest clonotypes first, and this may be useful for quickly gauging which clonotypes are the most expanded overall.

Usage

mergeCloneSizes(clustered_clone_sizes, sort_decreasing = TRUE)

Arguments

clustered_clone_sizes

the output of countCloneSizes.

sort_decreasing

a logical or NULL. If TRUE/FALSE, sorts the table by clonotype frequency with largest/smallest clones first, and if NULL, no order is guaranteed but the output is deterministic.

Value

a table object

See Also

countCloneSizes

Examples

clustered_clone_sizes <- countCloneSizes(get(data("combined_pbmc")))
mergeCloneSizes(clustered_clone_sizes)