simulate_offspring {APIS}

Simulate offspring

Description

Simulate offspring

Usage

simulate_offspring(
  sire_genotype,
  dam_genotype,
  number_offspring,
  ploidy_level = 2,
  sire_contribution = 1,
  dam_contribution = 1,
  recombination_rate = 0.5,
  genotyping_error = 0.01
)

Arguments

sire_genotype

sire genotype

dam_genotype

dam genotype

number_offspring

number of offspring to simulate

ploidy_level

ploidy level of offspring

sire_contribution

sire contribution

dam_contribution

dam contribution

recombination_rate

recombination rate (only important for tri/tetra ploids offspring)

genotyping_error

genotyping error

Value

list with matrix with simulated offspring and pedigree

Examples

data("APIS_sire")
data("APIS_dam")

# For diploide offspring
simulate_offspring(sire_genotype=APIS_sire, dam_genotype=APIS_dam,
                   number_offspring=10,
                   ploidy_level = 2,
                   sire_contribution = 1, dam_contribution = 1,
                   recombination_rate = 0.5,
                   genotyping_error = 0.01)

# For triploide offspring
simulate_offspring(sire_genotype=APIS_sire, dam_genotype=APIS_dam,
                   number_offspring=10,
                   ploidy_level = 3,
                   sire_contribution = 1, dam_contribution = 2,
                   recombination_rate = 0.5,
                   genotyping_error = 0.01)