Stochasticity module {AMPLE}

stochParamsSetterUI

Description

stochParamsSetterUI() is the UI part for the stochasticity options. Stochasticity is included in the projections in two areas: biological variability (e.g. recruitment) and estimation error (to represent the difference between the 'true' status of the stock and the estimated status that is used by the HCR). Estimation error includes bias and variability. The arguments to this function allow only some of these elements to be shown.

stochParamSetterServer() does the server side stuff for the stochasticity options.

set_stoch_params() sets up default values for the stochasticity parameters. Defined as a separate function so it can be used for testing outside of a reactive environment.

Usage

stochParamsSetterUI(
  id,
  show_var = FALSE,
  show_biol_sigma = TRUE,
  show_est_sigma = TRUE,
  show_est_bias = TRUE,
  init_biol_sigma = 0,
  init_est_sigma = 0,
  init_est_bias = 0
)

stochParamsSetterServer(id)

set_stoch_params(input)

Arguments

id

The id (shiny magic)

show_var

Show the variability options when app opens (default is FALSE).

show_biol_sigma

Show the biological productivity variability option (default is TRUE).

show_est_sigma

Show the estimation variability option (default is TRUE).

show_est_bias

Show the estimation bias option (default is TRUE).

init_biol_sigma

Default value for biological productivity variability (ignored if not shown).

init_est_sigma

Default value for estimation variability (ignored if not shown).

init_est_bias

Default value for estimation bias (ignored if not shown).

input

A list of stochasticity parameters.

Value

A taglist

A list of stochasticity options.