gui-utilities {zooimage}

Various GUI utility functions used by ZooImage

Description

These functions are usually not called directly by the user, but they are interesting for developers. They allow to select elements through dialog boxes.

Usage

selectObject(class = "data.frame", default = "", multiple = FALSE,
    title = paste0("Choose a ", class, ":"))
selectList(class = "data.frame", default = "", multiple = FALSE,
    title = paste0("Choose a list (of ", class, "s):"))
selectFile(type = c("ZipZid", "ZimZis", "LstZid", "ZidZidb", "Zip", "Zid", "Zidb",
    "Zim", "Zis", "Zie", "Zic", "Img", "TifPgm", "RData"), multiple = FALSE,
    quote = TRUE, title = NULL)
selectGroups(groups, multiple = TRUE, title = "Select taxa you want to plot")

createThreshold(ZIDat)

imageViewer(dir = getwd(), pgm = getOption("ZI.ImageViewer"))
startPgm(program, cmdline = "", switchdir = FALSE, iconize = FALSE, wait = FALSE)
modalAssistant(title, text, init, options = NULL, check = NULL,
    select.file = NULL, returnValOnCancel = "ID_CANCEL", help.topic = NULL)

Arguments

class

the class of objects to retrieve (or class of list components for selectList()).

default

the default item selected in the list.

multiple

are multiple selections allowed?

title

the title of the dialog box.

type

the type of file to list in selection dialog box.

quote

do we add quotes (\") around file names?

groups

a list of groups to select from.

ZIDat

a ZIDat object.

dir

directory to open in the image viewer.

pgm

program to use as image viewer. If not provided and not defined in the option(ZI.ImageViewer = ...), then, a reasonable default program is used (the file explorer is no better program found).

program

name of the program to start. It must match an entry in R options giving the actual executable that correspond to that program.

cmdline

the command line to run to start this program.

switchdir

do we switch R current directory to the directory where the program is located?

iconize

in case the ZooImage assistant is open, do we iconize it?

wait

do we wait that the external program is closed?

text

textual explanations to show in the modal assistant.

init

initial values for the modal assistant.

options

options to select in the modal assistant.

check

checkbox to add in the modal assistant.

select.file

prompt for a file to select in the modal assistant.

returnValOnCancel

what to return if the user clicks the Cancel button in the modal assistant dialog box?

help.topic

help topic to associate with the Help button of the modal assistant dialog box.

Details

As these functions are not made to be directly used by end-users, We don't give more details here. Developers interested to use these functions are encouraged to look at their code in the zooimage package source!

Value

A string or vector of strings of selected items. character(0) is returned to indicate the user clicked 'Cancel', while an empty string ("") is returned in case there is no corresponding element found.

createThreshold() proposes a dialog box to create a threshold on one variable in a ZIDat object (indicate minimum and maximum value allowed for that variable).

For imageViewer(), TRUE or FALSE is returned invisibly, depending if the program could be lauched or not. The problem is reported in a warning.

startPgm() is mostly invoked for its side effect of starting an external program. Status code returned by the program is returned if wait = TRUE.

modalAssistant() is currently disabled, and it will thus display no dialog box and return returnValOnCancel directly.

Author(s)

Philippe Grosjean <[e-mail]>

See Also

listSamples, noExtension

Examples

## Not run: 
## Create two datasets in R and ask for selecting one:
df1__ <- data.frame(x = 1:3, y = 4:6)
df2__ <- data.frame(z = 1:10)
selectObject() # Try also to click 'Cancel'
## Can select both too
selectObject(multiple = TRUE, title = "Choose one or more data.frames")
selectObject("nonexistingclass") # Returns an empty string!

## Create lists containing only data frames as components
lst1__ <- list(A = df1__, B = df2__)
lst2__ <- list(C = df1__)
selectList() # Try also to click 'Cancel'
## Can select both too
selectList(multiple = TRUE, title = "Select one or more lists")
selectList("nonexistingclass")
rm(df1__, df2__, lst1__, lst2__)

## Select one or more ZooImage files
selectFile() # One Zip or Zid file

## Select groups to process
selectGroups(c("Copepods", "Appendicularians", "Medusae"))

## Start default image viewer on the current working directory
imageViewer()

## TODO: examples for createThreshold(), startPgm() and modalAssistant()

## End(Not run)