Plot.zeta.scale.regular {zetadiv} | R Documentation |
Plotting of zeta diversity scaling with sample grain using hierarchical increases in grain size
Description
Plots the output of the function Zeta.scale.regular
.
Usage
Plot.zeta.scale.regular(
zeta.scale.reg,
size.init = 1,
add = FALSE,
ylim = NULL,
col = "black"
)
Arguments
zeta.scale.reg |
A list generated by the function |
size.init |
initial Size of the plots before aggregation. |
add |
Boolean value indicating if the graph must be plotted in a new graphics device or added to the active one. |
ylim |
Numeric vectors of length 2, giving the range of y values. |
col |
String indicating the color of the graph. |
Value
A plot of the zeta diversity scaling with the mapping grain n
x n
(the number of sites combined to generate data at a coarser grain) on the x-axis and the value of zeta on the y-axis.
References
Hui C. & McGeoch M.A. (2014). Zeta diversity as a concept and metric that unifies incidence-based biodiversity patterns. The American Naturalist, 184, 684-694.
Scheiner S.M., Chiarucci A., Fox G.A., Helmus M.R., McGlinn D.J. & Willig M.R. (2011). The underpinnings of the relationship of species richness with space and time. Ecological Monographs, 81, 195-213.
See Also
Zeta.decline.mc
, Zeta.order.mc
, Zeta.decline.ex
, Zeta.order.ex
,
Zeta.scale.regular
, Zeta.scale.min.dist
, rescale.regular
,
Examples
utils::data(bird.spec.fine)
xy.bird <- bird.spec.fine[1:400,1:2]
data.spec.bird <- bird.spec.fine[1:400,3:192]
##sam = 25 is used here for fast execution, but a higher value is advised
zeta.scale.reg <- Zeta.scale.regular(xy.bird, data.spec.bird, n = 1:3, order = 3,
sam = 25, normalize = "Jaccard",plot=FALSE)
dev.new()
Plot.zeta.scale.regular(zeta.scale.reg)