CodonChoiceBiases {xegaGeGene}

Biases in Rule Choice.

Description

Measures the biases in rule choice for each non-terminal. Statistics computed:

• dP: Difference in probability between random choice with equal probability and modulo rule with a codon precision.

• dH: Difference in entropy between random choice with equal probability and modulo rule with a codon precision.

Usage

CodonChoiceBiases(cv, precision)

Arguments

cv

Choice vector of grammar.

precision

Number of bits of codon.

Value

Data frame with the following columns

• $precision: Number of bits.

• $cv: i-th element of choice vector.

• $dp: Deviation from choice with equal probability for $precision.

• $dH: Entropy difference between choice with equal probability and biased choice for $precision.

See Also

Other Diagnostics: CodonChoiceBiasesDeprecated(), CodonPrecision(), tLCM()

Examples

 CodonChoiceBiases(c(1, 2, 3, 5), 3)
 CodonChoiceBiases(c(1, 2, 3, 5), 5)