combineRedundLinesInListAcRef {wrMisc}

Combine Redundant Lines In List, Deprecated

Description

The function combineRedundLinesInListAcRef() has been deprecated and replaced by combineRedundLinesInList() from the same package

Usage

combineRedundLinesInListAcRef(
  lst,
  listNa = c("ref", "quant"),
  refColNa = "xx",
  summarizeType = "av",
  NA.rm = TRUE,
  silent = FALSE,
  debug = FALSE,
  callFrom = NULL
)

Arguments

lst

(list) main input

listNa

(character) names of list-elements containing quantitation data (1st position) and protein/line annotation (2nd position)

refColNa

(character) in case the list-element to be used as reference is matrix or data.frame, the column to be used must be specified here

summarizeType

(character) the summarization method gets specified here; so far 'sum','av','med','first' and 'last' are implemented

NA.rm

(logical) pass to summarizing functions order to omit NAs, defaults to TRUE

silent

(logical) suppress messages

debug

(logical) additional messages for debugging

callFrom

(character) allow easier tracking of messages produced

Value

This function returns a list of same length as input

See Also

combineRedundLinesInList

Examples

x1 <- list(quant=matrix(11:34, ncol=3, dimnames=list(letters[8:1], LETTERS[11:13])), 
  annot=matrix(paste0(LETTERS[c(1:4,6,3:5)],LETTERS[c(1:4,6,3:5)]), ncol=1, 
  dimnames=list(paste(letters[1:8]),"xx")) )
## please use combineRedundLinesInList()
combineRedundLinesInList(lst=x1, refNa="annot", datNa="quant", refColNa="xx")