wTO {wTO}

wTO

Description

Calculates the weighted topologycal overlap (wTO) between a set of Nodes and the Overlapping nodes. This function implements the method from Nowick (2009).

Usage

wTO(A_TF, sign = c("abs", "sign"))

Arguments

A_TF

Is the weighted adjency matrix (correlation matrix).

sign

("abs", "sign") if the user wants to use the absolute correlation or the signed correlation.

Value

A matrix containing the wTO values.

Author(s)

Deisy Morselli Gysi <deisy at bioinf.uni-leipzig.de>

References

Katja Nowick, Tim Gernat, Eivind Almaas and Lisa Stubbs (2009) <doi:10.1073/pnas.0911376106>