GenomeScan_initialize {wISAM}

initialize

Description

Initialize a GenomeScan

Arguments

y

vector of length n - the phenotype of each of n genomes (individuals or strains)

X

matrix of dimension n-by-c - the covariate value of each individual for c covariates

G

a list where each element is of length n - the genotype of each individual at p loci

K

matrix of dimension n-by-n - the covariance of the phenotype

w

matrix of dimension n-by-n - the inverse variance of the phenotype

Value

an object of class GenomeScan

Examples

library(wISAM)

wgs <- GenomeScan$new(y = phenotype,
                      X = covariate_mat,
                      G = locus_list,
                      K = kinship_mat,
                      w = 1/se_mean_per_strain)