volcanoPlot {volcanoPlot}

Create a volcano plot

Description

Creates a paneled volcano plot showing the distribution of Adverse events. Options to highlight selected events and customize options are provided.

Usage

volcanoPlot(data, highlights = c(), ...)

Arguments

data

A data frame from getStats()

highlights

A list providing a column and values to be highlighted in the chart

...

Extra options to change the look of the plot. 'fillcol = c('sienna2', 'skyblue2', 'grey')': fill colors; 'pcutoff = 0.05': p value cutoff; ‘ecutoff = 1': estimate cutoff, 'GroupLabels = c(’Comparison Group', 'Reference Group')': custom group labels.

Value

a volcano plot created with ggplot

Examples

settings<-list(
  stratification_col="AEBODSYS",
  group_col="ARM",
  reference_group="Placebo",
  comparison_group="Xanomeline High Dose",
  id_col="USUBJID"
)
stats<-getStats(dfAE=safetyData::adam_adae, dfDemog = safetyData::adam_adsl, settings)
volcanoPlot(stats)