Clinical Graphs and Tables Adhering to Graphical Principles

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Documentation for package ‘visR’ version 0.4.1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

add_annotation	Add annotations to a visR object
add_CI	Add confidence interval (CI) to visR object
add_CI.ggsurvfit	Add confidence interval (CI) to visR object
add_CI.ggtidycuminc	Add confidence interval (CI) to visR object
add_CNSR	Add censoring symbols to a visR object
add_CNSR.ggsurvfit	Add censoring symbols to a visR object
add_CNSR.ggtidycuminc	Add censoring symbols to a visR object
add_highlight	Highlight a specific strata
add_highlight.ggsurvfit	Highlight a specific strata
add_quantiles	Add quantile indicators to visR plot
add_quantiles.ggsurvfit	Add quantile indicators to visR plot
add_risktable	Add risk tables to visR plots through an S3 method
add_risktable.ggsurvfit	Add risk tables to visR plots through an S3 method
add_risktable.ggtidycuminc	Add risk tables to visR plots through an S3 method
adtte	adtte - CDISC ADaM compliant time to event data set
align_plots	Align multiple ggplot graphs, taking into account the legend
apply_attrition	Apply list of inclusion/exclusion criteria to a patient-level dataframe
apply_theme	Applies a theme to a ggplot object.
brca_cohort	Cancer survival data
define_theme	Provides a simple wrapper for themes
estimate_cuminc	Competing Events Cumulative Incidence
estimate_KM	Wrapper for Kaplan-Meier Time-to-Event analysis
get_attrition	Generate cohort attrition table
get_COX_HR	Summarize Hazard Ratio from a survival object using S3 method
get_COX_HR.survfit	Summarize Hazard Ratio from a survival object using S3 method
get_pvalue	Summarize the test for equality across strata from a survival object using S3 method
get_quantile	Wrapper around quantile methods
get_quantile.survfit	Wrapper around quantile methods
get_risktable	Obtain risk tables for tables and plots
get_risktable.survfit	Obtain risk tables for tables and plots
get_risktable.tidycuminc	Obtain risk tables for tables and plots
get_summary	Summarize the descriptive statistics across strata from a survival object using S3 method
get_summary.survfit	Summarize the descriptive statistics across strata from a survival object using S3 method
get_tableone	Calculate summary statistics
get_tableone.default	Calculate summary statistics
legendopts	Translates options for legend into a list that can be passed to ggplot2
render	Render a data.frame, risktable, or tableone object as a table
StatStepribbon	Step ribbon statistic
stat_stepribbon	Step ribbon statistic
summarize_long	Calculate summary statistics from a vector
summarize_long.default	Calculate summary statistics from a vector
summarize_long.factor	Calculate summary statistics from a vector
summarize_long.integer	Calculate summary statistics from a vector
summarize_long.numeric	Calculate summary statistics from a vector
summarize_short	Create abbreviated variable summary for table1
summarize_short.default	Create abbreviated variable summary for table1
summarize_short.factor	Create abbreviated variable summary for table1
summarize_short.integer	Create abbreviated variable summary for table1
summarize_short.numeric	Create abbreviated variable summary for table1
Surv_CNSR	Create a Survival Object from CDISC Data
tableone	Display a summary Table (i.e. table one)
the_lhs	Find the "lhs" in the pipeline
tidyme	Extended tidy cleaning of selected objects using S3 method
tidyme.default	Extended tidy cleaning of selected objects using S3 method
tidyme.survfit	Extended tidy cleaning of selected objects using S3 method
visr	Plot a supported S3 object
visr.attrition	Plot a supported S3 object
visr.default	Plot a supported S3 object
visr.survfit	Plot a supported S3 object
visr.tidycuminc	Plot a supported S3 object